Package: sccore
Title: Core Utilities for Single-Cell RNA-Seq
Version: 1.0.4
Authors@R: c(person("Viktor","Petukhov", email="viktor.s.petuhov@ya.ru", role="aut"), person("Rasmus","Rydbirk", email="rrydbirk@bmb.sdu.dk", role="aut"), person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = "aut"), person("Evan","Biederstedt", email="evan.biederstedt@gmail.com", role=c("aut", "cre")))
Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
License: GPL-3 
Encoding: UTF-8
LazyData: true
Imports:
    dplyr, 
    ggplot2,
    ggrepel,
    graphics,
    grDevices,
    igraph,
    irlba,
    magrittr,
    Matrix,
    methods,
    parallel,
    pbmcapply,
    pROC,
    Rcpp,
    rlang,
    scales,
    stats,
    tibble,
    utils, 
    uwot, 
    withr
Depends:
    R (>= 3.5.0)
Suggests: 
    ggrastr (>= 0.1.7),
    jsonlite,
    rmumps,
    testthat
RoxygenNote: 7.2.3
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen
NeedsCompilation: yes
URL: https://github.com/kharchenkolab/sccore
BugReports: https://github.com/kharchenkolab/sccore/issues
Author: Viktor Petukhov [aut], Rasmus Rydbirk [aut], Peter Kharchenko [aut], Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
