* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck'
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'stops/DESCRIPTION' ... OK
* this is package 'stops' version '1.0-1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'stops' can be installed ... [23s/27s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [34s/28s] NOTE
bcStressMin: local variable ‘lambdaorig’ assigned but may not be used
bcStressMin: local variable ‘t’ assigned but may not be used
c_inequality: local variable ‘out’ assigned but may not be used
c_linearity: local variable ‘x’ assigned but may not be used
c_linearity: local variable ‘y’ assigned but may not be used
conf_adjust: local variable ‘bb’ assigned but may not be used
conf_adjust: local variable ‘cc’ assigned but may not be used
conf_adjust: local variable ‘metric’ assigned but may not be used
ljoptim: local variable ‘n’ assigned but may not be used
powerStressMin: local variable ‘deltam’ assigned but may not be used
stoploss: local variable ‘cassociation’ assigned but may not be used
stoploss: local variable ‘cclumpiness’ assigned but may not be used
stoploss: local variable ‘cclusteredness’ assigned but may not be used
stoploss: local variable ‘ccomplexity’ assigned but may not be used
stoploss: local variable ‘cconvexity’ assigned but may not be used
stoploss: local variable ‘cdependence’ assigned but may not be used
stoploss: local variable ‘cfaithfulness’ assigned but may not be used
stoploss: local variable ‘cfunctionality’ assigned but may not be used
stoploss: local variable ‘chierarchy’ assigned but may not be used
stoploss: local variable ‘cinequality’ assigned but may not be used
stoploss: local variable ‘clinearity’ assigned but may not be used
stoploss: local variable ‘cmanifoldness’ assigned but may not be used
stoploss: local variable ‘cnonmonotonicity’ assigned but may not be
  used
stoploss: local variable ‘coutlying’ assigned but may not be used
stoploss: local variable ‘cregularity’ assigned but may not be used
stoploss: local variable ‘cskinniness’ assigned but may not be used
stoploss: local variable ‘csparsity’ assigned but may not be used
stoploss: local variable ‘cstriatedness’ assigned but may not be used
stoploss: local variable ‘cstringiness’ assigned but may not be used
tgpoptim: local variable ‘fold’ assigned but may not be used
tgpoptim: local variable ‘valsorig’ assigned but may not be used
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [32s/11s] OK
** found \donttest examples: check also with --run-donttest
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE
