* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck'
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'circumstance/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'circumstance' version '0.0.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'circumstance' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
pfilter 6.485  0.197   6.454
** found \donttest examples: check also with --run-donttest
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
9a10,17
> Welcome to pomp!
> 
> As of version 4.6, no user-visible pomp function has a name that
> includes a dot ('.'). Function names have been changed to replace the
> dot with an underscore ('_'). For more information, see the pomp blog:
> https://kingaa.github.io/pomp/blog.html.
> 
> 
57,58c65
< Removed 3 rows containing missing values or values outside the scale range
< (`geom_line()`). 
---
> Removed 3 rows containing missing values (`geom_line()`). 
88,89c95
< Removed 3 rows containing missing values or values outside the scale range
< (`geom_line()`). 
---
> Removed 3 rows containing missing values (`geom_line()`). 
119,120c125
< Removed 3 rows containing missing values or values outside the scale range
< (`geom_line()`). 
---
> Removed 3 rows containing missing values (`geom_line()`). 
138,139c143
< Removed 3 rows containing missing values or values outside the scale range
< (`geom_line()`). 
---
> Removed 3 rows containing missing values (`geom_line()`). 
9a10,17
> Welcome to pomp!
> 
> As of version 4.6, no user-visible pomp function has a name that
> includes a dot ('.'). Function names have been changed to replace the
> dot with an underscore ('_'). For more information, see the pomp blog:
> https://kingaa.github.io/pomp/blog.html.
> 
> 
17a18,25
> Welcome to pomp!
> 
> As of version 4.6, no user-visible pomp function has a name that
> includes a dot ('.'). Function names have been changed to replace the
> dot with an underscore ('_'). For more information, see the pomp blog:
> https://kingaa.github.io/pomp/blog.html.
> 
> 
9a10,17
> Welcome to pomp!
> 
> As of version 4.6, no user-visible pomp function has a name that
> includes a dot ('.'). Function names have been changed to replace the
> dot with an underscore ('_'). For more information, see the pomp blog:
> https://kingaa.github.io/pomp/blog.html.
> 
> 
 [34s/34s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: OK
