# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
# $Id: Portfile 115905 2014-01-14 02:46:20Z ryandesign@macports.org $

PortSystem              1.0

name                    samtools
version                 0.1.19
categories              science
platforms               darwin
maintainers             gmail.com:haroldpimentel openmaintainer
license                 MIT

description             Tools for alignments in the SAM format

long_description        SAM (Sequence Alignment/Map) Tools provide various \
                        utilities for manipulating alignments in the SAM \
                        format, including sorting, merging, indexing and \
                        generating alignments in a per-position format.

homepage                http://samtools.sourceforge.net/
master_sites            sourceforge:project/samtools/samtools/${version}

checksums               rmd160  4e74858d3762f785452d1c9507bd127de9791894 \
                        sha256  d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4

use_bzip2               yes

depends_lib             port:zlib port:ncurses

use_configure           no

configure.cflags-append -std=gnu89

build.args              CC=${configure.cc} \
                        CFLAGS="-g -Wall ${configure.cflags} ${configure.cc_archflags}"

destroot {
    xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin
    xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib
    xinstall -d ${destroot}${prefix}/include/bam
    eval xinstall -m 644 [glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam
    
    xinstall -d ${destroot}${prefix}/share/doc/${name}
    xinstall -m 644 -W ${worksrcpath} \
        AUTHORS COPYING NEWS \
        ${destroot}${prefix}/share/doc/${name}
}
